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1

A bioinformatics pipeline integrating predictive metagenomics profiling for the analysis of 16S rDNA/rRNA sequencing data originated from foods

Mataragas, Marios, Alessandria, Valentina, Ferrocino, Ilario, Rantsiou, Kalliopi, Cocolin, Luca

Journal:

Food Microbiology

Year:

2018

Language:

english

File:

PDF, 1.52 MB

english, 2018

2

Black soldier fly and gut health in broiler chickens: insights into the relationship between cecal microbiota and intestinal mucin composition

Biasato, Ilaria, Ferrocino, Ilario, Dabbou, Sihem, Evangelista, Rocchina, Gai, Francesco, Gasco, Laura, Cocolin, Luca, Capucchio, Maria Teresa, Schiavone, Achille

Journal:

Journal of Animal Science and Biotechnology

Year:

2020

Language:

english

File:

PDF, 2.20 MB

english, 2020

3

Correction to: Microbiome definition re-visited: old concepts and new challenges

Berg, Gabriele, Rybakova, Daria, Fischer, Doreen, Cernava, Tomislav, VergÃ¨s, Marie-Christine Champomier, Charles, Trevor, Chen, Xiaoyulong, Cocolin, Luca, Eversole, Kellye, Corral, Gema Herrero, Kazo

Journal:

Year:

2020

File:

PDF, 195 KB

2020

4

Gut Microbiota and Mucin Composition in Female Broiler Chickens Fed Diets including Yellow Mealworm (Tenebrio molitor, L.)

Biasato, Ilaria, Ferrocino, Ilario, Grego, Elena, Dabbou, Sihem, Gai, Francesco, Gasco, Laura, Cocolin, Luca, Capucchio, Maria Teresa, Schiavone, Achille

Journal:

Year:

2019

Language:

english

File:

PDF, 1.97 MB

english, 2019

5

Dried fruit pomace inclusion in poultry diet: growth performance, intestinal morphology and physiology

Colombino, Elena, Ferrocino, Ilario, Biasato, Ilaria, Cocolin, Luca Simone, Prieto-Botella, Daniel, ZduÅczyk, Zenon, Jankowski, Jan, Milala, Joanna, Kosmala, Monika, Fotschki, Bartosz, Capucchio, Mar

Journal:

Journal of Animal Science and Biotechnology

Year:

2020

File:

PDF, 1.51 MB

2020

6

Culture independent methods to assess the diversity and dynamics of microbiota during food fermentation

Cocolin, Luca, Alessandria, Valentina, Dolci, Paola, Gorra, Roberta, Rantsiou, Kalliopi

Journal:

International Journal of Food Microbiology

Year:

2013

Language:

english

File:

PDF, 693 KB

english, 2013

7

Bacterial species associated with sound and Botrytis-infected grapes from a Greek vineyard

Aspasia A. Nisiotou, Kalliopi Rantsiou, Vassilios Iliopoulos, Luca Cocolin, George-John E. Nychas

Journal:

International Journal of Food Microbiology

Year:

2011

Language:

english

File:

PDF, 266 KB

english, 2011

8

Microbiome definition re-visited: old concepts and new challenges

Berg, Gabriele, Rybakova, Daria, Fischer, Doreen, Cernava, Tomislav, VergÃ¨s, Marie-Christine Champomier, Charles, Trevor, Chen, Xiaoyulong, Cocolin, Luca, Eversole, Kellye, Corral, Gema Herrero, Kazo

Journal:

Year:

2020

File:

PDF, 2.07 MB

2020

9

Impact of Saccharomyces cerevisiae Strain Selection on Malolactic Fermentation by Lactobacillus plantarum and Oenococcus oeni

Englezos, Vasileios, Torchio, Fabrizio, Vagnoli, Paola, Krieger-Weber, Sibylle, Rantsiou, Kalliopi, Cocolin, Luca

Journal:

American Journal of Enology and Viticulture

Year:

2020

Language:

english

File:

PDF, 754 KB

english, 2020

10

Volatile profile of white wines fermented with sequential inoculation of Starmerella bacillaris and Saccharomyces cerevisiae

Englezos, Vasileios, Rantsiou, Kalliopi, Cravero, Francesco, Torchio, Fabrizio, Pollon, Matteo, Daniela, Fracassetti, Ortiz-Julien, Anne, Gerbi, Vincenzo, Rolle, Luca, Cocolin, Luca

Journal:

Year:

2018

Language:

english

File:

PDF, 614 KB

english, 2018

11

Next generation microbiological risk assessment meta-omics: The next need for integration

Cocolin, Luca, Mataragas, Marios, Bourdichon, Francois, Doulgeraki, Agapi, Pilet, Marie-France, Jagadeesan, Balamurugan, Rantsiou, Kalliopi, Phister, Trevor

Journal:

International Journal of Food Microbiology

Year:

2017

Language:

english

File:

PDF, 508 KB

english, 2017

12

Description of the bacteriocins produced by two strains of Enterococcus faecium isolated from Italian goat milk

Luca Cocolin, Roberto Foschino, Giuseppe Comi, Maria Grazia Fortina

Journal:

Food Microbiology

Year:

2007

Language:

english

File:

PDF, 199 KB

english, 2007

13

Erratum to “Detection, quantification and vitality of Listeria monocytogenes in food as determined by quantitative PCR” [Int. J. of Food Microbiol. 121 (2008) 99–105]

Kalliopi Rantsiou, Valentina Alessandria, Rosalinda Urso, Paola Dolci, Luca Cocolin

Journal:

International Journal of Food Microbiology

Year:

2009

Language:

english

File:

PDF, 88 KB

english, 2009

14

Microbial ecology of Gorgonzola rinds and occurrence of different biotypes of Listeria monocytogenes

Luca Cocolin, Daniele Nucera, Valentina Alessandria, Kalliopi Rantsiou, Paola Dolci, Maria Auxilia Grassi, Sara Lomonaco, Tiziana Civera

Journal:

International Journal of Food Microbiology

Year:

2009

Language:

english

File:

PDF, 420 KB

english, 2009

15

Zooming into food-associated microbial consortia: a ‘cultural’ evolution

Cocolin, Luca, Ercolini, Danilo

Journal:

Current Opinion in Food Science

Year:

2015

Language:

english

File:

PDF, 1.54 MB

english, 2015

16

Fate of Lactococcus lactis starter cultures during late ripening in cheese models

Ruggirello, Marianna, Cocolin, Luca, Dolci, Paola

Journal:

Food Microbiology

Year:

2016

Language:

english

File:

PDF, 740 KB

english, 2016

17

Editorial: Integration of omics into MRA

Cocolin, Luca, Membré, Jeanne-Marie, Zwietering, Marcel

Journal:

International Journal of Food Microbiology

Year:

2017

Language:

english

File:

PDF, 105 KB

english, 2017

18

Ensuring safety in artisanal food microbiology

Cocolin, Luca, Gobbetti, Marco, Neviani, Erasmo, Daffonchio, Daniele

Journal:

Nature Microbiology

Year:

2016

Language:

english

File:

PDF, 69 KB

english, 2016

19

[Food Microbiology and Food Safety] Molecular Techniques in the Microbial Ecology of Fermented Foods || Vegetable Fermentations

Cocolin, Luca, Ercolini, Danilo

Year:

2008

Language:

english

File:

PDF, 333 KB

english, 2008

20

Starmerella bacillaris in winemaking: opportunities and risks

Englezos, Vasileios, Giacosa, Simone, Rantsiou, Kalliopi, Rolle, Luca, Cocolin, Luca

Journal:

Current Opinion in Food Science

Year:

2017

Language:

english

File:

PDF, 160 KB

english, 2017

21

The Microbial Diversity of Non-Korean Kimchi as Revealed by Viable Counting and Metataxonomic Sequencing

Maoloni, Antonietta, Ferrocino, Ilario, MilanoviÄ, Vesna, Cocolin, Luca, Corvaglia, Maria Rita, Ottaviani, Donatella, Bartolini, Chiara, Talevi, Giulia, Belleggia, Luca, Cardinali, Federica, Marabini

Journal:

Year:

2020

File:

PDF, 2.88 MB

2020

22

Changes in gut bacterial communities in canaries infected by Macrorhabdus ornithogaster

Robino, Patrizia, Ferrocino, Ilario, Rossi, Giacomo, Dogliero, Andrea, Alessandria, Valentina, Grosso, Lisa, Galosi, Livio, Tramuta, Clara, Cocolin, Luca, Nebbia, Patrizia

Journal:

Avian Pathology

Year:

2018

Language:

english

File:

PDF, 1.07 MB

english, 2018

23

Modeling of the Fermentation Behavior of Starmerella bacillaris

Rantsiou, Kalliopi, Englezos, Vasileios, Torchio, Fabrizio, Risse, Paul-Andre, Cravero, Francesco, Gerbi, Vincenzo, Rolle, Luca, Cocolin, Luca

Journal:

American Journal of Enology and Viticulture

Year:

2017

Language:

english

File:

PDF, 1.48 MB

english, 2017

24

Volatile profiles and chromatic characteristics of red wines produced with Starmerella bacillaris and Saccharomyces cerevisiae

Englezos, Vasileios, Rantsiou, Kalliopi, Cravero, Francesco, Torchio, Fabrizio, Giacosa, Simone, Ortiz-Julien, Anne, Gerbi, Vincenzo, Rolle, Luca, Cocolin, Luca

Journal:

Food Research International

Year:

2018

Language:

english

File:

PDF, 383 KB

english, 2018

25

Microbiota of thePlanalto de Bolona: an artisanal cheese produced in uncommon environmental conditions in the Cape Verde Islands

Valentina Alessandria, Paola Dolci, Kalliopi Rantsiou, Daniele Pattono, Alessandra Dalmasso, Tiziana Civera, Luca Cocolin

Journal:

World Journal of Microbiology and Biotechnology

Year:

2010

Language:

english

File:

PDF, 332 KB

english, 2010

26

Erratum to “Detection, quantification and vitality of Listeria monocytogenes in food as determined by quantitative PCR” [Int. J. of Food Microbiol. 121 (2008) 99–105]

Kalliopi Rantsiou, Valentina Alessandria, Rosalinda Urso, Paola Dolci, Luca Cocolin

Journal:

International Journal of Food Microbiology

Year:

2008

Language:

english

File:

PDF, 87 KB

english, 2008

27

Exploitation of the non-Saccharomyces yeast Starmerella bacillaris (synonym Candida zemplinina) in wine fermentation: Physiological and molecular characterizations

Englezos, Vasileios, Rantsiou, Kalliopi, Torchio, Fabrizio, Rolle, Luca, Gerbi, Vincenzo, Cocolin, Luca

Journal:

International Journal of Food Microbiology

Year:

2015

Language:

english

File:

PDF, 399 KB

english, 2015

28

Sausage fermentation and starter cultures in the era of molecular biology methods

Franciosa, Irene, Alessandria, Valentina, Dolci, Paola, Rantsiou, Kalliopi, Cocolin, Luca

Journal:

International Journal of Food Microbiology

Year:

2018

Language:

english

File:

PDF, 480 KB

english, 2018

29

Analysis of PCR-based methods for characterization of Listeria monocytogenes strains isolated from different sources

Luca Cocolin, Simone Stella, Raffaella Nappi, Elena Bozzetta, Carlo Cantoni, Giuseppe Comi

Journal:

International Journal of Food Microbiology

Year:

2005

Language:

english

File:

PDF, 531 KB

english, 2005

30

Association between Grape Yeast Communities and the Vineyard Ecosystems

Drumonde-Neves, João, Franco-Duarte, Ricardo, Lima, Teresa, Schuller, Dorit, Pais, Célia, Cocolin, Luca

Journal:

Year:

2017

Language:

english

File:

PDF, 1.99 MB

english, 2017

31

Control of Brettanomyces bruxellensis on wine grapes by post-harvest treatments with electrolyzed water, ozonated water and gaseous ozone

Cravero, Francesco, Englezos, Vasileios, Rantsiou, Kalliopi, Torchio, Fabrizio, Giacosa, Simone, Río Segade, Susana, Gerbi, Vincenzo, Rolle, Luca, Cocolin, Luca

Journal:

Innovative Food Science & Emerging Technologies

Year:

2018

Language:

english

File:

PDF, 706 KB

english, 2018

32

Probiotic potential of a Lactobacillus rhamnosus cheese isolate and its effect on the fecal microbiota of healthy volunteers

Bautista-Gallego, Joaquin, Ferrocino, Ilario, Botta, Cristian, Ercolini, Danilo, Cocolin, Luca, Rantsiou, Kalliopi

Journal:

Food Research International

Year:

2019

Language:

english

File:

PDF, 4.32 MB

english, 2019

33

Yeast dynamics during spontaneous fermentation of mawè and tchoukoutou, two traditional products from Benin

Greppi, Anna, Rantisou, Kalliopi, Padonou, Wilfrid, Hounhouigan, Joseph, Jespersen, Lene, Jakobsen, Mogens, Cocolin, Luca

Journal:

International Journal of Food Microbiology

Year:

2013

Language:

english

File:

PDF, 619 KB

english, 2013

34

Effects of dietary Hermetia illucens meal inclusion on cecal microbiota and small intestinal mucin dynamics and infiltration with immune cells of weaned piglets

Biasato, Ilaria, Ferrocino, Ilario, Colombino, Elena, Gai, Francesco, Schiavone, Achille, Cocolin, Luca, Vincenti, Valeria, Capucchio, Maria Teresa, Gasco, Laura

Journal:

Journal of Animal Science and Biotechnology

Year:

2020

File:

PDF, 2.23 MB

2020

35

Minimizing the environmental impact of cleaning in winemaking industry by using ozone for cleaning-in-place (CIP) of wine bottling machine

Englezos, Vasileios, Rantsiou, Kalliopi, Cravero, Francesco, Torchio, Fabrizio, Giacosa, Simone, Segade, Susana Río, Gai, Guglielmo, Dogliani, Enrico, Gerbi, Vincenzo, Cocolin, Luca, Rolle, Luca

Journal:

Journal of Cleaner Production

Year:

2019

File:

PDF, 5.25 MB

2019

36

Bacillus cereus, Bacillus thuringiensis and Bacillus mycoides differentiation using a PCR-RE technique

Marisa Manzano, Luca Cocolin, Carlo Cantoni, Giuseppe Comi

Journal:

International Journal of Food Microbiology

Year:

2003

Language:

english

File:

PDF, 199 KB

english, 2003

37

Aerobic deterioration stimulates outgrowth of spore-forming Paenibacillus in corn silage stored under oxygen-barrier or polyethylene films

Borreani, Giorgio, Dolci, Paola, Tabacco, Ernesto, Cocolin, Luca

Journal:

Journal of Dairy Science

Year:

2013

Language:

english

File:

PDF, 495 KB

english, 2013

38

Direct Application of Rep-PCR on Type I Sourdough Matrix to Monitor the Dominance and Persistence of a Lactobacillus plantarum Starter Throughout Back-Slopping

Dolci, Paola, Cocolin, Luca

Journal:

Journal of Food Science

Year:

2017

Language:

english

File:

PDF, 333 KB

english, 2017

39

Shotgun metagenomics and volatilome profile of the microbiota of fermented sausages

Ferrocino, Ilario, Bellio, Alberto, Giordano, Manuela, Macori, Guerrino, Romano, Angelo, Rantsiou, Kalliopi, Decastelli, Lucia, Cocolin, Luca

Journal:

Applied and Environmental Microbiology

Year:

2017

Language:

english

File:

PDF, 4.76 MB

english, 2017

40

Antibacterial and antifungal activity of LAB bacteriocins derived from the valorization of dairy byproducts using AWDA assay

Ghodhbane, Hanene, Ben Hamed, Karim, Alesendria, Valentina, Abdelly, Chadly, Cocolin, Luca, Regaya, Imed

Journal:

Year:

2018

Language:

english

File:

PDF, 53 KB

english, 2018

41

Blue cheese-making has shaped the population genetic structure of the mould Penicillium roqueforti

Ropars, Jeanne, López-Villavicencio, Manuela, Snirc, Alodie, Lacoste, Sandrine, Giraud, Tatiana, Cocolin, Luca

Journal:

Year:

2017

Language:

english

File:

PDF, 1.29 MB

english, 2017

42

Microbial dynamics and biodiversity in table olive fermentation: culture-dependent and -independent approaches

Botta, Cristian, Cocolin, Luca

Journal:

Frontiers in Microbiology

Year:

2012

Language:

english

File:

PDF, 400 KB

english, 2012

43

Antilisterial Effect and Influence on Listeria monocytogenes Gene Expression of Enterocin or Enterococcus faecalis in Sliced Dry-Cured Ham Stored at 7°C

MONTIEL, RAQUEL, QUESILLE-VILLALOBOS, ANA, ALESSANDRIA, VALENTINA, MEDINA, MARGARITA, COCOLIN, LUCA SIMONE, RANTSIOU, KALLIOPI

Journal:

Journal of Food Protection

Year:

2019

File:

PDF, 497 KB

2019

44

Diversity of Candida zemplinina strains from grapes and Italian wines

Rosanna Tofalo, Maria Schirone, Sandra Torriani, Kalliopi Rantsiou, Luca Cocolin, Giorgia Perpetuini, Giovanna Suzzi

Journal:

Food Microbiology

Year:

2012

Language:

english

File:

PDF, 719 KB

english, 2012

45

Molecular methods to assess Listeria monocytogenes route of contamination in a dairy processing plant

Valentina Alessandria, Kalliopi Rantsiou, Paola Dolci, Luca Cocolin

Journal:

International Journal of Food Microbiology

Year:

2010

Language:

english

File:

PDF, 465 KB

english, 2010

46

Mitochondrial DNA restriction enzyme analysis and evaluation of the enological characteristics of Saccharomyces cerevisiae strains isolated from grapes of the wine-producing area of Collio (Italy)

Giuseppe Comi, Michela Maifreni, Marisa Manzano, Corrado Lagazio, Luca Cocolin

Journal:

International Journal of Food Microbiology

Year:

2000

Language:

english

File:

PDF, 414 KB

english, 2000

47

Phytase-producing capacity of yeasts isolated from traditional African fermented food products and PHYPk gene expression of Pichia kudriavzevii strains

Greppi, Anna, Krych, Łukasz, Costantini, Antonella, Rantsiou, Kalliopi, Hounhouigan, D. Joseph, Arneborg, Nils, Cocolin, Luca, Jespersen, Lene

Journal:

International Journal of Food Microbiology

Year:

2015

Language:

english

File:

PDF, 1.73 MB

english, 2015

48

Occurrence of antibiotic resistance genes in the Faecal DNA of healthy omnivores, Ovo-Lacto vegetarians and vegans

Milanović, Vesna, Osimani, Andrea, Aquilanti, Lucia, Tavoletti, Stefano, Garofalo, Cristiana, Polverigiani, Serena, Litta-Mulondo, Alice, Cocolin, Luca, Ferrocino, Ilario, Di Cagno, Raffaella, Turroni

Journal:

Molecular Nutrition & Food Research

Year:

2017

Language:

english

File:

PDF, 1.19 MB

english, 2017

49

Fermented meats (and the symptomatic case of the Flemish food pyramid): Are we heading towards the vilification of a valuable food group?

Leroy, Frédéric, Aymerich, Teresa, Champomier-Vergès, Marie-Christine, Cocolin, Luca, De Vuyst, Luc, Flores, Mónica, Leroi, Françoise, Leroy, Sabine, Talon, Régine, Vogel, Rudi F., Zagorec, Monique

Journal:

International Journal of Food Microbiology

Year:

2018

Language:

english

File:

PDF, 169 KB

english, 2018

50

Apical periodontitis: preliminary assessment of microbiota by 16S rRNA high throughput amplicon target sequencing

Mussano, Federico, Ferrocino, Ilario, Gavrilova, Natalija, Genova, Tullio, Dell’Acqua, Alessandro, Cocolin, Luca, Carossa, Stefano

Journal:

BMC Oral Health

Year:

2018

Language:

english

File:

PDF, 973 KB

english, 2018

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